Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDTGAAAGVPSCASKLVPCGGYLNATAA------PP-----------PASCCGPLREAAANETACLCAILTNK--AA---LQAFGV--AP-EQGLLLAKRCGVTTDASACAKSASSSATAAAAAAV
1W2Q Chain:A ((23-119))
--------------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAP-QRCDL--------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31781 for 442 contacts (-71.9/contact) +
2D Compatibility (PS) -7064 + (NN) 891 + (LL) 2196
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -41358.0 ( -93.57 by residue)
QMean score : 0.244
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: