Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--VYRPWPSECVEVAN--VMVEQCKMFFVHQES------------PPTAECCRWFSSRRKYAKERRRLCRCLEFL------TTAFKNLKPDVLALSDQCHFSSGFPMSRDHTCA-
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCM-----CPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMS-------QPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50618 for 563 contacts (-89.9/contact) +
2D Compatibility (PS) -8177 + (NN) 309 + (LL) 604
1D Compatibility (HY) -4000 + (ID) 600
Total energy: -62482.0 ( -110.98 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: