Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ASPTCDTVQNILAPCAGFLTGQEPSKACCTGVNNLNNSRKTKADRVAVCNCIKELTKSI-----AYD-----PKRMPLLSTKCGVKPDFPAVDKNLDCSKLPV
3OB4 Chain:A ((429-485))
-------------------------ERCCNELNEFE------NNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP---------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6870 for 251 contacts (-27.4/contact) +
2D Compatibility (PS) -4695 + (NN) -1883 + (LL) 1776
1D Compatibility (HY) -2800 + (ID) 350
Total energy: -14822.0 ( -59.05 by residue)
QMean score : 0.261
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: