Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCGQVTSSMTPCMSYLTG----GGS------PTPACCGGVKSLNSMASTPADRKAACGCLKSAAGAMT---N---------L---------NMGNAASLPGKCGISLPYPISTSTDCSKVN
1B1U Chain:A ((15-109))
-------NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--------PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35556 for 405 contacts (-87.8/contact) +
2D Compatibility (PS) -6250 + (NN) 400 + (LL) 988
1D Compatibility (HY) -4000 + (ID) 400
Total energy: -44818.0 ( -110.66 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: