Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
HITCGTVTSTMTQCISYLTNG----G----P--------------LPSSCCVAVKSLNQMAQTTPDRRQVCECLKSAGKEIK--G-L-------NIDLVAALPTTCGVSLSYPIGFNTNCDSISIAV
1PSY Chain:A ((25-117))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR------------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34017 for 446 contacts (-76.3/contact) +
2D Compatibility (PS) -6319 + (NN) -2784 + (LL) 1780
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -44090.0 ( -98.86 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: