Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LNCGQVTSAMAPCVPYLMG---RGP--------------LGGCCGGVKGLMGAAKTPADRKTACTCLKSAANSMK--G-I-------DAGKAAGLPAACGVNIPYKISPSTDCSKVQ
1SM7 Chain:A ((13-101))
-------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39757 for 407 contacts (-97.7/contact) +
2D Compatibility (PS) -6069 + (NN) 608 + (LL) 1332
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -47086.0 ( -115.69 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: