Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------------VTCSPVQLSPCLGPINSGAPSPTTCCQKLRE-QRPCLCGYLKN------PSLRQYVNSPNARKLASNCGVPVPQC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16033 for 358 contacts (-44.8/contact) +
2D Compatibility (PS) -6502 + (NN) -1757 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 500
Total energy: -27592.0 ( -77.07 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: