Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DTSPSQCKEERN--LLVNACRPVIYG-----RSP----------SADCCQRVRVSHVECVCPYVTPKTASIIG----------VIGVDNVVKKIEGCGRTVPRKFKCGSITTP
2LVF Chain:A ((5-101))
---QEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19466 for 415 contacts (-46.9/contact) +
2D Compatibility (PS) -6829 + (NN) 2150 + (LL) 384
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -25411.0 ( -61.23 by residue)
QMean score : 0.180
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: