Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
INCDNDLI--GLASKCQKYVVK-----QGSSAK------PSPECCKVVKNVNVPCVCSHVTKQIEDLI-------------SMKKVFDVAKSCGKKVTPGTKCGSYTVPN
2LVF Chain:A ((8-101))
--CREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30249 for 409 contacts (-74.0/contact) +
2D Compatibility (PS) -6865 + (NN) -742 + (LL) 144
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -42262.0 ( -103.33 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: