Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSCNTDLT--DLVSKCQRFVIK-----TGPKFS------PSPSCCAVVKNVDVACVCDLITKEIEDMI-------------DMDKMVYVARSCGKKISAGTKCGNTQANAGGIVSGYIVPTA
2LVF Chain:A ((7-106))
-ECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-P--MRCP------------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39273 for 454 contacts (-86.5/contact) +
2D Compatibility (PS) -7699 + (NN) -3000 + (LL) 992
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -54430.0 ( -119.89 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: