Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCSSVTKQLTPCLSYLTSGGA-PTAACCGGVKSLNGMASMSTPDRQATCNCLKAAS---KGINLQNAVSLPAKCGVKIGYSISPNTDCSKVR
1AFH Chain:A ((1-93))
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAA-RTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52781 for 721 contacts (-73.2/contact) +
2D Compatibility (PS) -9204 + (NN) -1231 + (LL) -28
1D Compatibility (HY) -7200 + (ID) 2350
Total energy: -72794.0 ( -100.96 by residue)
QMean score : 0.285
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: