Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EDCSNAMDKLAPCTSAVG----LSSNGVK-------PSSECCDALKGTSTSCVCKSVR-----------------------AVISLPAKCNLPALTCSGSR
2LVF Chain:A ((16-108))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCPMG-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11066 for 332 contacts (-33.3/contact) +
2D Compatibility (PS) -6020 + (NN) -310 + (LL) 428
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -21468.0 ( -64.66 by residue)
QMean score : 0.242
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: