Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCLDNLSNMQVCAPLVL----PGAVNPA-------PNSNCCIALQATNKDCICNALR-----------------------AATTFTTTCNLPSLDC
2LVF Chain:A ((16-105))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRC
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24470 for 311 contacts (-78.7/contact) +
2D Compatibility (PS) -5879 + (NN) -3739 + (LL) 492
1D Compatibility (HY) -4800 + (ID) 700
Total energy: -39096.0 ( -125.71 by residue)
QMean score : 0.357
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: