Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPSACSTQLNNLSVCAPFVVPGAPDSTPSADCCTALQTIDDACMCS------------TLRIASRLPSHCNL-TPVTCDVNA
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAV-SKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37280 for 424 contacts (-87.9/contact) +
2D Compatibility (PS) -6896 + (NN) -7573 + (LL) 372
1D Compatibility (HY) -3600 + (ID) 1250
Total energy: -56227.0 ( -132.61 by residue)
QMean score : 0.245
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: