Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSADCAATAESLSPCASAV-GNNPQDPTPECCAVLQTANVDCICALV------------QSTMQLPSECGLETP-QCPSD
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC---
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31574 for 398 contacts (-79.3/contact) +
2D Compatibility (PS) -6534 + (NN) -5400 + (LL) -244
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -50002.0 ( -125.63 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: