Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-AGACGKTSPDQEAMKLAPCAMAAQ-DAKAAVSDSCCAQVRSIGQNPSCLCSVMLSDMAKASGIKAEIAITIPKRCNIANRPVGYKCGDYTLP
2RKN Chain:A ((1-77))
AIDLCGMS-----QDELNECKPAVSKENPTSPSQPCCTALQHA--DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP---TC------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31985 for 513 contacts (-62.3/contact) +
2D Compatibility (PS) -7557 + (NN) -280 + (LL) -28
1D Compatibility (HY) -4000 + (ID) 1100
Total energy: -44950.0 ( -87.62 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: