Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRC-IKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCNTVR
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHAD----------FACLCGYKNSPWLGSFGVDPELASALPKQCGLANA--------PTC----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14076 for 514 contacts (-27.4/contact) +
2D Compatibility (PS) -7953 + (NN) -2942 + (LL) 1664
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -27507.0 ( -53.52 by residue)
QMean score : 0.208
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: