Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ETSLLAPSCADVTKAVAPCLNFLKGKGGADPSQACCDGARDLAKEARTKNDRQAICECLKTALGKVG------SY----DASRVPLIAKKCNVDINIPPINDKTDCSKAVSSIMPKSL
1PNB Chain:B ((12-66))
--------------------------------EQCCNELYQED--------QVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9588 for 232 contacts (-41.3/contact) +
2D Compatibility (PS) -4401 + (NN) -137 + (LL) 2360
1D Compatibility (HY) -1600 + (ID) 450
Total energy: -13816.0 ( -59.55 by residue)
QMean score : 0.203
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: