Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSSSSCTNVLVSMSPCLDYIQGNSS-----KP-------SSSCCSQLANVVRSQPQCLCEVLNG-GASSL-G--VSVNQTQAMALPTACNVKTPPASQCNATIL
1S6D Chain:A ((20-102))
-----------MLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM--S-QPCQ----
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27929 for 423 contacts (-66.0/contact) +
2D Compatibility (PS) -6668 + (NN) -1321 + (LL) 1492
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -40076.0 ( -94.74 by residue)
QMean score : 0.261
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: