Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCSQVSSYLAPCIPYLRGS----GG--------AVPSNCCSGIKNLNGAAQTSQDRKAACGCIKNAAGSIS-G----INYALASQMPSKCGVSIPYQISPNIDCNSVN
1S6D Chain:A ((19-97))
--------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD--------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM---------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46573 for 401 contacts (-116.1/contact) +
2D Compatibility (PS) -6301 + (NN) 381 + (LL) 1436
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -56207.0 ( -140.17 by residue)
QMean score : 0.241
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: