Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SEVPTSRGGMSPTQCKEKQR--LLVNACSAVMFG-----HSP----------SSDCCKHVRLTQVQCVCPAITSKLAGLV-------------GVEHTIKQIESCGRTVPRNFKCGI
2LVF Chain:A ((4-101))
----------AQEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19289 for 409 contacts (-47.2/contact) +
2D Compatibility (PS) -6842 + (NN) -1096 + (LL) 472
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -30455.0 ( -74.46 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: