Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSCPNELNRLNVCAPFVV----PGVPEAT-------PSSDCCAALQSVQHDCLCNTLR-----------------------IASRLPSRCNIPALSCGVQINA
2LVF Chain:A ((16-107))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCPM----
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30671 for 327 contacts (-93.8/contact) +
2D Compatibility (PS) -5868 + (NN) -2028 + (LL) 596
1D Compatibility (HY) -5600 + (ID) 850
Total energy: -44421.0 ( -135.84 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: