Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---QC--SLSQLSQCISAVTQGTNPPP--LCCNEVASADFGCFCNLVSRGNYPPAYV--SNAVLVPQKCGGEAYSKLKGKTCAGKSYHTGS
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-----TC---------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34159 for 432 contacts (-79.1/contact) +
2D Compatibility (PS) -7108 + (NN) -6684 + (LL) 192
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -52409.0 ( -121.32 by residue)
QMean score : 0.210
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: