Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQGQGACNAATLQPCLAASKGTAAPTTQCCAAVKNVGGAAGGPQCLCSLTTSALA----RANGV-----NPDAAMAIPQKCGLAVPKGFTCNNKPVPGS
3OB4 Chain:A ((428-486))
--------------------------QERCCNELNEF---ENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQ------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19545 for 269 contacts (-72.7/contact) +
2D Compatibility (PS) -5189 + (NN) -1071 + (LL) 964
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -28241.0 ( -104.99 by residue)
QMean score : 0.269
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: