Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------ATTCNALQLSPCAGAII-------------GNAAPTAACCSRMKA-QQPCLCQYAKD------PNLQRYVSSPNGKKVMAACKVPVPSC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26328 for 449 contacts (-58.6/contact) +
2D Compatibility (PS) -6748 + (NN) 407 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -35619.0 ( -79.33 by residue)
QMean score : 0.268
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: