Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GSDCQNDIQMLETTCYKYVAKD----APTS------PPSQECCDTMNGVDVPCVCSYLGAPGIKENI-------SMEKVFYVAQQCGVSIPGNCGGSKRA
1S6D Chain:A ((21-97))
-----------LNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAI-MMMLNEPMWIRMRDQVMSMAHNLPIECNLM-----------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28784 for 361 contacts (-79.7/contact) +
2D Compatibility (PS) -6129 + (NN) -1435 + (LL) 84
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -41314.0 ( -114.44 by residue)
QMean score : 0.201
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: