Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EGCDNDRQ--DMIRECAKYQKFP----KEPKKD------PSKACCAVWQKADFPCLCKDVTKE-------------------LEKVAYVAKFCKWPFPSGYKCGSYTFPLGQ
2LVF Chain:A ((7-101))
-ECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS----------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9140 for 375 contacts (-24.4/contact) +
2D Compatibility (PS) -6713 + (NN) -4780 + (LL) 168
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -24215.0 ( -64.57 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: