Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DPDQQPPCNSFMSVLSCQSATMSESAMPSPACCAALQKFH-DADCLCQVLLSA-RSA-AATANV---PFNLKAALEIPMKCALRTVSAPPGYSCGGMVVPRSPPPTST
3OB4 Chain:A ((428-489))
----------------------------QERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP--QRCD----------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32317 for 305 contacts (-106.0/contact) +
2D Compatibility (PS) -5949 + (NN) -3373 + (LL) 1060
1D Compatibility (HY) -800 + (ID) 550
Total energy: -41929.0 ( -137.47 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: