Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QGCRGDFR--NLAAQCMPYVQK-----PGPKTP------PSKGCCNAVRTVDVPCACQHLPPGVGGTV-------------SLEKVAFVLRVCGKPLKPGTKCGSYTVPPAV
2LVF Chain:A ((7-101))
-ECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS----------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31975 for 417 contacts (-76.7/contact) +
2D Compatibility (PS) -7022 + (NN) -1323 + (LL) 412
1D Compatibility (HY) -4000 + (ID) 600
Total energy: -44508.0 ( -106.73 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: