Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSGCTTVLI---GMAPCLNYITGSSS---------------SPSSSCCSQLASVVQSQPRCLCVALNG---GGA---ALG----ITINRTLALALPGACNVQTPPVSQCDAA
1SM7 Chain:A ((4-106))
--KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRI-YQIAKNLPNVCNMKQ--IGTCPF-
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64524 for 504 contacts (-128.0/contact) +
2D Compatibility (PS) -7374 + (NN) -227 + (LL) 160
1D Compatibility (HY) -4800 + (ID) 900
Total energy: -77665.0 ( -154.10 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: