Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKTPIQSAAASLSSCLSAAGNAKAKVPPTCCTKVTALINTAPKCLCAVVLSPLAK------KAG-----IKPAIAITIPKRCNIKNRPVGKKCGSYIIP
2DS2 Chain:B ((7-64))
------------------------------LRQCCNQLRQV---DRPCVCPVLRQAAQQVLQRQIIQGPQQLRRLFDAARNLPNICNIPNI------------
General information:
TITO was launched using:
RESULT:
Template:
2DS2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27422 for 247 contacts (-111.0/contact) +
2D Compatibility (PS) -4738 + (NN) -1488 + (LL) 2004
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -35044.0 ( -141.88 by residue)
QMean score : 0.220
(partial model without unconserved sides chains):
PDB file :
Tito_2DS2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DS2-query.scw
PDB file :
Tito_Scwrl_2DS2.pdb
: