Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCGQVETSLAPCMPYLTG---G-G---NP---------------AAPCCNGVQNLKLLTPTTTDRRDACRCVKAAASKFQ------NI----KEDAASALPTKCGVQIGIPISMTTNCDQIQ
1PSY Chain:A ((25-120))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMR------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26650 for 476 contacts (-56.0/contact) +
2D Compatibility (PS) -6478 + (NN) -2382 + (LL) 1720
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -38140.0 ( -80.13 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: