Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITCPDADITLKSCLPYVAH---PTQWP----------PLECCTAVLGLTARAVTREDRQAVCKCLLGLMNG-I------PG----LDLTAFAAVPILCAANIGYIIRPNMDCNSVP
2LVF Chain:A ((16-101))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42653 for 345 contacts (-123.6/contact) +
2D Compatibility (PS) -6620 + (NN) -5001 + (LL) 1788
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -54786.0 ( -158.80 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: