Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------MIVWYELTLFGVLTHIISNVFFPSESDYLSTIKFLGSFAVGFGFR--PLGAFIFGYIGDKYGRRKVLLTSVILVSISSTAIAV-IPDFKEIG---------ILSPILLLLCRIVQGTAAGGETSINSAFLIEHSSDKKDLGFLGSMKAFSGALGSITCFLMIAIVKKFTGENYEIW-GWRLLF--------YFCSIMGVIGFLTRYIM-----------------EESLAYKTHDQNKSLSNSPF--LELIRSYKKAFMIAIGLGIAQNAIVYSAIMFYNISVKELILSGIDIKNVVRITVEITFGTSAVLFAILSDKVGRKNVMVLILIALACAGLPAFSLLSYDN-HYIVTLTFLLISIPIGASFGIYN-SLVCELLPTKVRCTGFSLAHNISAGIFGGISPSICMWLIEKTETEL----AAGFYLTMCALISLIYVLQIKTEDKKVDW-------- |
| 4GC0 Chain:A ((5-479)) | YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE-LAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GC0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -321939 for 3420 contacts (-94.1/contact) +
2D Compatibility (PS) -41002 + (NN) -4485 + (LL) 44
1D Compatibility (HY) -25600 + (ID) 3600
Total energy: -396582.0 ( -115.96 by residue)
QMean score : 0.206
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