Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDRLKKIHWLLVTNVIALFCIGIVVQYSSAGGKWAPFAIHQLVIFSFFFLLAIAMSFIELDFYLKHAYFFYIAAVISLLVVNFFGLYTMGATRWIRIGPISLQPSEFAKVGLILALARYFNKQSVYKMMEFQRLLKALIFIFLPVFLVLKQPNLGTAVIMLFIGASIIFTAIIKRAHLIIYGIISILVIPAIWPSLRSYHKQRILSFLDSSVDPLGIGYNAQQSQIAIGSGGLFGKSFVSGSQTQLGFLPEKHTDFAFAVLSEEWGFLGSMTLIVLYTTLLAIIFSIAYRSKNYFSKLVSIGIFAFFGVHFFINIGMTIGLLPVIGDPLPFLSYGGSTTAASSICIGLLLSSV--ASMKDLKLKLSISSIERPVV----- |
4WD8 Chain:A ((25-292)) | ----SKIIFRLLLNVLMSIIAIISYQWYEQLGIHLTVAPFSLLGIAIAIFLGFRNSASYSRFVEARNLWGTVLIAERTLVRQLRNIL----------------PAE---------------------HDAHRRIVSYLVAFSWSLKHQLRKTDP---------------TADLRRL----------------------LPEERVTEILASS---------MPTNRILLLAGNEIGQLREAG----------KLSDITYGLMDNKLDELAHVLGGCERLATTPVPFAYTLILQRTVYLFCTLLPFALVGDL---------------HYMTPFVSVFISYTFLSWDSLAEELEDPFGTAANDLPLNAMCNTIERNLLDMTGQ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4WD8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -234886 for 1906 contacts (-123.2/contact) +
2D Compatibility (PS) -27002 + (NN) -8185 + (LL) 9400
1D Compatibility (HY) -9200 + (ID) 2550
Total energy: -272423.0 ( -142.93 by residue)
QMean score : 0.344
|
|
|