Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MQVVEIVIRNSTYKISCESGKKDHLLHLANSFNKLVSSISHK-TGGKGSDTLNFLLAALI----LEDKVLELTKKLDEINQKR---ENYKNEKRTEYTEVLDRVNKIIECIKD-----
1O3U Chain:A ((-2-123))
HMDAAKDDLEHAKHDLE-HGFYNWACFSSQQAAEKAVKAVFQRMGAQAWGYSVPDFLGELSSRFEIPEELMDHALELDKACDALPSGSPRNRYSRIEAERLVNYAEKIIRFCEDLLSRI
General information:
TITO was launched using:
RESULT:
Template:
1O3U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18677 for 769 contacts (-24.3/contact) +
2D Compatibility (PS) -10814 + (NN) -6696 + (LL) 56
1D Compatibility (HY) 2400 + (ID) 600
Total energy: -34331.0 ( -44.64 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_1O3U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O3U-query.scw
PDB file :
Tito_Scwrl_1O3U.pdb
: