Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKGIITNIGTIINTTIRSNSDQIFHIK-AQNLSSIHEGDSIACSGVCLTVVDIIND-----IFTVQISQETMKVSNLGAWKVGKKINLEQAMRLSDKIDGHLVHGHVDETAKILTINQNLGSHEIKLSCPQELIKFVAKKGSVTLDGVSLTVNSVIGREFTVNIIPYTWQNTTFQYNKVNDYLNLEVDMIARYLDQLIQYKYN
4GQN Chain:B ((1-201))
MFTGIITDIGKV-DRVKPLNEGVLLRIETAYDPETIELGASIACSGVCLTVVALPEKGSNARWFEVEAWEEALRLTTISSWQSGRKINLERSLKLGDEMGGHLVFGHVDGQAEIVERKDEGDAVRFTLRAPEELAPFIAQKGSVALDGTSLTVNGVNANEFDVLLIRHSLEVTTWGERKAGDKVNIEIDQLARYAARLAQYQKL
General information:
TITO was launched using:
RESULT:
Template:
4GQN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103795 for 1506 contacts (-68.9/contact) +
2D Compatibility (PS) -20921 + (NN) 907 + (LL) 204
1D Compatibility (HY) -16000 + (ID) 4150
Total energy: -143755.0 ( -95.45 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_4GQN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GQN-query.scw
PDB file :
Tito_Scwrl_4GQN.pdb
: