Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIGNASKELGKLIANKLNVQPFSAQVSKFADGAINAEVESNLCSQEVYIIQSISPPVNDHLMELLFIIDAVKRSGTKRITTIIPYYGYSRQDRIIKNNNMQSALNAKLVANLIQTAGASSVAVIDLHSSQIEGFFDVPLTNL---SCFEAFADSIHIENLAIVAPDVGAIGRARAFAKTLEKKYEIKLSDKIIIIDKYREKAGTSHVMNVIGEATNKNCVIVDDIVDSGGTLCNAALALKNRRARSVISCITHGVLSGNAIEKISSSSLDKLVTTDTIFHKLEKTDKIEIVSIANILTHFIQGGKDAS
1DKR Chain:B ((10-288))
LKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARS---REPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKNLEDIVIVSPDHGGVTRARKLAD--------RLKAPIAIIDKR---------MNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTIKELVVTNSI--KLPEEKKIERFKQLSVGPLLAEAIIRVH
General information:
TITO was launched using:
RESULT:
Template:
1DKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -218457 for 2164 contacts (-101.0/contact) +
2D Compatibility (PS) -29709 + (NN) -18297 + (LL) 1584
1D Compatibility (HY) -26800 + (ID) 5950
Total energy: -297629.0 ( -137.54 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1DKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DKR-query.scw
PDB file :
Tito_Scwrl_1DKR.pdb
: