Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRDEDLELLKFYYEVGIDCTLTEGNEEKKVEKEKNSKAIQSPTIQAEVQKKEQQSMFPSDWIIEARKLASKCNSMDELRSAVKSFEGCEIKKTSTNTVFSDGNQSAKIMLVGEAPGANEDLKGIPFCGASGM----LLDKMLSAINLDRT----------------KVYISNTVFWRPPGNRKPTDLELDMCRPFVEKHIALI----SPHILILVGGISCYSLLDNTKTISTLRGRFHTYTNQYLSYSITTAVIFHPAYLLRQPAQKRLAWEDLKKIREYLNSTNNCTGV |
2J8X Chain:A ((57-195)) | -------------------------------------------------------------------------------------------------------SDIKVVILGQDPYHGGQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKG--KPGSHADIGWAWFTDHVISLLSERLKACVFMLWGAKAGDKASL----I--------NS------KKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J8X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -59580 for 740 contacts (-80.5/contact) +
2D Compatibility (PS) -12412 + (NN) -8699 + (LL) 7860
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -76381.0 ( -103.22 by residue)
QMean score : 0.338
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