Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAERANDIRPGQVLEHNGGLFLVVSIMHTQPGKGGAYIQAEMKNIKTGAKLYERFRSDATIRRAILDEEEYIYLFTEGNIVNLMHPSNYEQI--TINLDLLEEK-KIYLQDNMRIKVVTYQDKIIFAHVPDYVRLTVKETESFIKGQTITSSYKPAVLENGMRINVPQFIKEEDKIVVYTPDDSYYERVKE
3CPF Chain:A ((5-126))
FPMQCSALRKNGFVVLKGRPCKIVEMSTSKT---HAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK-----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3CPF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42844 for 703 contacts (-60.9/contact) +
2D Compatibility (PS) -12397 + (NN) -4753 + (LL) 4424
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -60220.0 ( -85.66 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_3CPF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CPF-query.scw
PDB file :
Tito_Scwrl_3CPF.pdb
: