Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFITFEGIDGSGKTIQSELLANYFKQIHGENNMVLTREPGGTDFAEKVRGILLK-DSIDPVSELLLLISMRYEHVKKVILPALKKGKIVICDRFIDSTIAYQGYGLGVDLELIRDLHKLVKIKYPDTTFILDIDVQIGLSRAMDKNKYEEMNISFYNKVRKGFQEIAINEPDRCSIITEIEAKDNNQVHVEIVNKVTATKPVLLRK
3LD9 Chain:C ((22-217))
MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVD-----------------DMEFYYRVRDGFYDIAKKNPHRCHVIT--------FVHLEVIKVLQ---------
General information:
TITO was launched using:
RESULT:
Template:
3LD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89587 for 1293 contacts (-69.3/contact) +
2D Compatibility (PS) -18754 + (NN) -14403 + (LL) 2348
1D Compatibility (HY) -23200 + (ID) 5100
Total energy: -148696.0 ( -115.00 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_3LD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LD9-query.scw
PDB file :
Tito_Scwrl_3LD9.pdb
: