Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------MSRQSGASETKGFYLSGRYYSRFFASMGKLKLRSEDVNYRIAT------------DFWNDGRDTPEELYHLDKHS
2VPV Chain:A ((73-166))
ENFALEIMFDKHKEYFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKNKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFVQVTVS
General information:
TITO was launched using:
RESULT:
Template:
2VPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13069 for 365 contacts (35.8/contact) +
2D Compatibility (PS) -6585 + (NN) -1237 + (LL) 0
1D Compatibility (HY) -400 + (ID) 550
Total energy: 4297.0 ( 11.77 by residue)
QMean score : -0.025
(partial model without unconserved sides chains):
PDB file :
Tito_2VPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VPV-query.scw
PDB file :
Tito_Scwrl_2VPV.pdb
: