Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNGTVNKVILVGNLGRNPEIRTMQNGKEMANFSIATSEGWTDKFSGVRSEKTEWHNIVIFSEGLVKVVKDFVRKGSKVYIEGSLKTRKWTDQNGSERYTTEVVLQNFNGTLTLLDSRNNAASSDYKSNEYKQDETGQKDQYENFDSEVKEELIDDEIPF
1EQQ Chain:B ((2-121))
-ASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGK-LAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV-NVGGTMQMLGGRQGGGA-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1EQQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16973 for 776 contacts (-21.9/contact) +
2D Compatibility (PS) -12903 + (NN) -1961 + (LL) 1856
1D Compatibility (HY) -12000 + (ID) 3300
Total energy: -45281.0 ( -58.35 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_1EQQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EQQ-query.scw
PDB file :
Tito_Scwrl_1EQQ.pdb
: