Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGIKIAPSILSANFAKLGEEVKRINNLGVDYIHIDVMDGNFVPNITIGPGVISTIRKYTNLFFDVHLMIKSPGDHVESFINAGADIITIHAE--AEVHLERLIRKIKSYKNVNDAKKKVQVGVSIVPSTSPGIFEYIIHELDIVLIMTVNPGFGGQEFIYSQLGKISVVKKMIRERGLKTQISVDGGVSLSNAADIIKAGADILVAGSAIFRAKNMKKAVNDFKNLSL
1RPX Chain:B ((11-225))
--IIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSL--------GAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKR
General information:
TITO was launched using:
RESULT:
Template:
1RPX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -204012 for 1810 contacts (-112.7/contact) +
2D Compatibility (PS) -23051 + (NN) -8902 + (LL) 328
1D Compatibility (HY) -24800 + (ID) 5750
Total energy: -266187.0 ( -147.06 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_1RPX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RPX-query.scw
PDB file :
Tito_Scwrl_1RPX.pdb
: