Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVMPDKWIREKAESFGMIEPFVDHK-----SSKGVMSFGLSSYGYDARVDNKFKIFTNVNSAVVDPKDFSKNSFIDKETDVCIIPPNSFALASTVEYFHIPRDVLAICVGKSTYARCGIIVNVTPLEPGWKGHVTLEFSNTTPLPAKIYANEGACQFVFLSGESECEKSYDDIKGKYMNQHGITLPLVK
4DHK Chain:B ((5-163))
--IKSDKWIRRMAEEHKMIEPFVPDQVRAAEDGRRIVSYGTSSYGYDIRCADEFKIFTNINSTIVDPKNFDEGSFVDFKGDVCIIPPNSFALARTVEYFRIPRTVLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYANEGVAQVLFF-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
4DHK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104335 for 1104 contacts (-94.5/contact) +
2D Compatibility (PS) -17326 + (NN) -7790 + (LL) 1564
1D Compatibility (HY) -20400 + (ID) 5200
Total energy: -153487.0 ( -139.03 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_4DHK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DHK-query.scw
PDB file :
Tito_Scwrl_4DHK.pdb
: