Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKELYRDSIVKSLKDKFNYGNIMQVPKLVKVCINMGVGGAATDNKAINEPFDDLYLIAGQKPVSTFAKKSISGFKIRKGATVGCKVTLRRDKMYEFLERLIYVALPREKDFRGFSVKQFDGNGNFSFGIKEHISFLEIDYDKISKIRGMDINIVTSAASDKEAKELLLAFKFPFFD
1MJI Chain:A ((7-180))
-LKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK
General information:
TITO was launched using:
RESULT:
Template:
1MJI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99555 for 1263 contacts (-78.8/contact) +
2D Compatibility (PS) -18446 + (NN) -4856 + (LL) 208
1D Compatibility (HY) -16800 + (ID) 4250
Total energy: -143699.0 ( -113.78 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1MJI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MJI-query.scw
PDB file :
Tito_Scwrl_1MJI.pdb
: