Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSPCPRAKVCFSPGEDCAVLIISEIDQSKE-----SVLVQEYTF-TLETIARALINAKERSVDVEVILDKSQLHS---KYSVINKLFSNGIPVWIDDKPKIAHNKVIIVDNQ-------KVITGSFNLTKTAKKGNAENLLIIKNYPELVQQYVKNWEIRKSQSYKYAS
1XDP Chain:A ((340-495))
--------VLLYYPY-HTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLYTDYSLLTAD-ARITNEVRRVFNFIENPYRPVTF
General information:
TITO was launched using:
RESULT:
Template:
1XDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49665 for 1072 contacts (-46.3/contact) +
2D Compatibility (PS) -15178 + (NN) -4202 + (LL) 572
1D Compatibility (HY) -6800 + (ID) 800
Total energy: -76073.0 ( -70.96 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_1XDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XDP-query.scw
PDB file :
Tito_Scwrl_1XDP.pdb
: