Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLN---DKSNEITSKLVICPPFTSLPGNIEL--NSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERTH---ETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKSRL----PIH-GEYTVAYEPIWAIGTGHVPSNNAIAEVIEVIQSYTSKK---------HVIYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
2BTM Chain:B ((4-247))
---IIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVIS--VVCAPFLFLDRLVQAADGTDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPASFLQLVEAGRH--
General information:
TITO was launched using:
RESULT:
Template:
2BTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138466 for 1888 contacts (-73.3/contact) +
2D Compatibility (PS) -23945 + (NN) -9188 + (LL) 864
1D Compatibility (HY) -18000 + (ID) 4750
Total energy: -193485.0 ( -102.48 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_2BTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BTM-query.scw
PDB file :
Tito_Scwrl_2BTM.pdb
: