Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDFAVRYKIT--IEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGEKVTLHCGGRTDAGVHALGQVAHFDME--RKFELYKIRNAINYHLKSIPIVVLNAETVDNTFHSRFSAKKRYYEYRIIN-RYAPAALEAGYAWQVFNPLDVNIMREAAKYLLGKHNLLSFRSKDCQATNPIRTIDDIDIVQNGSHIYIKISAISFLHNQVRIIVGTLVEFGKSRTNPQKMLNILNQCKRNAAGVTAPPFGLYLAKIDY
1DJ0 Chain:B ((4-246))
------YKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTL--GVNANLPG-DIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY
General information:
TITO was launched using:
RESULT:
Template:
1DJ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160338 for 1938 contacts (-82.7/contact) +
2D Compatibility (PS) -25263 + (NN) -6442 + (LL) 1200
1D Compatibility (HY) -18800 + (ID) 4900
Total energy: -214543.0 ( -110.70 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_1DJ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DJ0-query.scw
PDB file :
Tito_Scwrl_1DJ0.pdb
: