Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIFRLLFLLVFISVNSYAVIKQDLSNNHYIQKINEITSKELLLPLPDDKLLGDSKAPILMIEYASLTCYHCSLFHREVFPEIKKKYIDTGKMLYIFRHFPLDY-RGLKAAMLSYCYE--KQEDYFNFNKAVFNSIDSWNYSNLSDLTVLQKVAAL-SNLKQDTFNRCINDKEVMDKIINDKSLAINKLGIMATPIFFIKLNNDRSHTEPNKIRHEGYKAQEYFTNVIDRLYEKAIVK
3GHA Chain:A ((18-194))
---------------------------------------------IKGQPVLGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDT-EQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKD-SDLNQKMNIQATPTIYVNDKV-----------IKNFADYDEIKETIEKELKGK---
General information:
TITO was launched using:
RESULT:
Template:
3GHA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130234 for 1372 contacts (-94.9/contact) +
2D Compatibility (PS) -17927 + (NN) -7054 + (LL) 5324
1D Compatibility (HY) -8800 + (ID) 1650
Total energy: -160341.0 ( -116.87 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_3GHA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GHA-query.scw
PDB file :
Tito_Scwrl_3GHA.pdb
: